Set up your controller to use a Bome MIDI port and set MIDI paths as follows. Anything without a translator will pass through those paths.
Then use MIDI learn for the functions that you want. If you need to change the outgoing MIDI from your controller, you can write translators in Bome MIDI Translator Pro. You might need write translators for both the outgoing and return paths.
This posting is an example of what was done on an APC MINI MK2.
Steve Caldwell
Bome Customer Care
Also available for paid consulting services: bome@sniz.biz